From 7c82120d34a88d3de3388ec3675cdc80fb735aa9 Mon Sep 17 00:00:00 2001
From: Theodore Tsirpanis <teo@tsirpanis.gr>
Date: Thu, 19 Mar 2026 07:59:41 +0200
Subject: [PATCH] [htslib] Update to version 1.23.1. (#50544)

---
 ports/htslib/portfile.cmake | 2 +-
 ports/htslib/vcpkg.json     | 2 +-
 versions/baseline.json      | 2 +-
 versions/h-/htslib.json     | 5 +++++
 4 files changed, 8 insertions(+), 3 deletions(-)

diff --git a/ports/htslib/portfile.cmake b/ports/htslib/portfile.cmake
index 3ca276f9dd..81a9953dc5 100644
--- a/ports/htslib/portfile.cmake
+++ b/ports/htslib/portfile.cmake
@@ -2,7 +2,7 @@ vcpkg_from_github(
     OUT_SOURCE_PATH SOURCE_PATH
     REPO samtools/htslib
     REF "${VERSION}"
-    SHA512 bb1a9c03d3b9f113a030c2c36e7c354e60395f7deb9377ca1993e4d26fb1e1df69570a60a5a4696841d29266df1052558eed7ddb877d1248a82103520a695150
+    SHA512 4fefb02ded13808afdb04b343d84bf78127338a8110ef7b11417cc1b62763ae4aafce65c35d711f713475e86df9e44c4082d64ee9d445dd6ff61b083de2af77e
     HEAD_REF develop
     PATCHES
         0001-set-linkage.patch
diff --git a/ports/htslib/vcpkg.json b/ports/htslib/vcpkg.json
index e54fc98022..a28c0cc356 100644
--- a/ports/htslib/vcpkg.json
+++ b/ports/htslib/vcpkg.json
@@ -1,6 +1,6 @@
 {
   "name": "htslib",
-  "version": "1.23",
+  "version": "1.23.1",
   "description": "C library for high-throughput sequencing data formats",
   "homepage": "https://github.com/samtools/htslib",
   "license": "MIT",
diff --git a/versions/baseline.json b/versions/baseline.json
index d1bb109c3a..162d98f0f6 100644
--- a/versions/baseline.json
+++ b/versions/baseline.json
@@ -3825,7 +3825,7 @@
       "port-version": 1
     },
     "htslib": {
-      "baseline": "1.23",
+      "baseline": "1.23.1",
       "port-version": 0
     },
     "http-parser": {
diff --git a/versions/h-/htslib.json b/versions/h-/htslib.json
index 1a0b4af26d..aa318ae422 100644
--- a/versions/h-/htslib.json
+++ b/versions/h-/htslib.json
@@ -1,5 +1,10 @@
 {
   "versions": [
+    {
+      "git-tree": "e816c278c782488050f25e0079e9d9dcd15c1deb",
+      "version": "1.23.1",
+      "port-version": 0
+    },
     {
       "git-tree": "b776c03599b6e6e52bca75dcc040ef91895e7eae",
       "version": "1.23",