[hypre] Update to 2.19.0 (#13252)

Co-authored-by: wangli28 <wangli28@beyondsoft.com>
This commit is contained in:
Albert Ziegenhagel 2020-09-02 19:41:34 +02:00 committed by GitHub
parent d73ead568b
commit ced9dfb8e2
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9 changed files with 17 additions and 232 deletions

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@ -1,5 +1,5 @@
Source: hypre
Version: 2.11.2-3
Version: 2.19.0
Homepage: https://computation.llnl.gov/projects/hypre-scalable-linear-solvers-multigrid-methods
Description: SCALABLE LINEAR SOLVERS AND MULTIGRID METHODS
Build-Depends: mpi
Build-Depends: mpi, openblas, lapack

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@ -1,33 +0,0 @@
--- a/src/blas/f2c.h Fri Sep 11 18:57:56 2015
+++ b/src/blas/f2c.h Thu Dec 22 18:20:08 2016
@@ -190,18 +190,18 @@
typedef struct Namelist Namelist;
/* The following undefs are to prevent conflicts with external libraries */
-#undef abs
-#define abs(x) ((x) >= 0 ? (x) : -(x))
-#define dabs(x) (doublereal)abs(x)
-#ifndef min
-#define min(a,b) ((a) <= (b) ? (a) : (b))
-#define max(a,b) ((a) >= (b) ? (a) : (b))
-#endif
-#define dmin(a,b) (doublereal)min(a,b)
-#define dmax(a,b) (doublereal)max(a,b)
-#define bit_test(a,b) ((a) >> (b) & 1)
-#define bit_clear(a,b) ((a) & ~((uinteger)1 << (b)))
-#define bit_set(a,b) ((a) | ((uinteger)1 << (b)))
+//#undef abs
+//#define abs(x) ((x) >= 0 ? (x) : -(x))
+//#define dabs(x) (doublereal)abs(x)
+//#ifndef min
+//#define min(a,b) ((a) <= (b) ? (a) : (b))
+//#define max(a,b) ((a) >= (b) ? (a) : (b))
+//#endif
+//#define dmin(a,b) (doublereal)min(a,b)
+//#define dmax(a,b) (doublereal)max(a,b)
+//#define bit_test(a,b) ((a) >> (b) & 1)
+//#define bit_clear(a,b) ((a) & ~((uinteger)1 << (b)))
+//#define bit_set(a,b) ((a) | ((uinteger)1 << (b)))
/* procedure parameter types for -A and -C++ */

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@ -1,28 +0,0 @@
--- a/src/utilities/_hypre_utilities.h Thu Jun 09 15:56:18 2016
+++ b/src/utilities/_hypre_utilities.h Wed Jan 04 18:08:27 2017
@@ -13,6 +13,7 @@
#ifndef hypre_UTILITIES_HEADER
#define hypre_UTILITIES_HEADER
+#include "_hypre_export.h"
#include "HYPRE_utilities.h"
#ifdef HYPRE_USING_OPENMP
@@ -610,7 +611,7 @@
#ifdef HYPRE_TIMING_GLOBALS
hypre_TimingType *hypre_global_timing = NULL;
#else
-extern hypre_TimingType *hypre_global_timing;
+extern HYPRE_EXPORT hypre_TimingType *hypre_global_timing;
#endif
/*-------------------------------------------------------
@@ -781,7 +782,7 @@
* Global variable used in hypre error checking
*--------------------------------------------------------------------------*/
-extern HYPRE_Int hypre__global_error;
+extern HYPRE_EXPORT HYPRE_Int hypre__global_error;
#define hypre_error_flag hypre__global_error
/*--------------------------------------------------------------------------

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@ -1,33 +0,0 @@
--- a/src/lapack/f2c.h Fri Sep 11 18:57:56 2015
+++ b/src/lapack/f2c.h Thu Dec 22 18:22:26 2016
@@ -190,18 +190,18 @@
typedef struct Namelist Namelist;
/* The following undefs are to prevent conflicts with external libraries */
-#undef abs
-#define abs(x) ((x) >= 0 ? (x) : -(x))
-#define dabs(x) (doublereal)abs(x)
-#ifndef min
-#define min(a,b) ((a) <= (b) ? (a) : (b))
-#define max(a,b) ((a) >= (b) ? (a) : (b))
-#endif
-#define dmin(a,b) (doublereal)min(a,b)
-#define dmax(a,b) (doublereal)max(a,b)
-#define bit_test(a,b) ((a) >> (b) & 1)
-#define bit_clear(a,b) ((a) & ~((uinteger)1 << (b)))
-#define bit_set(a,b) ((a) | ((uinteger)1 << (b)))
+//#undef abs
+//#define abs(x) ((x) >= 0 ? (x) : -(x))
+//#define dabs(x) (doublereal)abs(x)
+//#ifndef min
+//#define min(a,b) ((a) <= (b) ? (a) : (b))
+//#define max(a,b) ((a) >= (b) ? (a) : (b))
+//#endif
+//#define dmin(a,b) (doublereal)min(a,b)
+//#define dmax(a,b) (doublereal)max(a,b)
+//#define bit_test(a,b) ((a) >> (b) & 1)
+//#define bit_clear(a,b) ((a) & ~((uinteger)1 << (b)))
+//#define bit_set(a,b) ((a) | ((uinteger)1 << (b)))
/* procedure parameter types for -A and -C++ */

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@ -1,38 +0,0 @@
--- a/src/struct_ls/pfmg3_setup_rap.c Thu Jun 09 15:56:18 2016
+++ b/src/struct_ls/pfmg3_setup_rap.c Thu Dec 22 17:45:20 2016
@@ -19,13 +19,28 @@
* allow for coarsening to be done in the x- and y-directions also.
*--------------------------------------------------------------------------*/
-#define MapIndex(in_index, cdir, out_index) \
- hypre_IndexD(out_index, cdir) = hypre_IndexD(in_index, 2); \
- cdir = (cdir + 1) % 3; \
- hypre_IndexD(out_index, cdir) = hypre_IndexD(in_index, 0); \
- cdir = (cdir + 1) % 3; \
- hypre_IndexD(out_index, cdir) = hypre_IndexD(in_index, 1); \
- cdir = (cdir + 1) % 3;
+//#define MapIndex(in_index, cdir, out_index) \
+// hypre_IndexD(out_index, cdir) = hypre_IndexD(in_index, 2); \
+// cdir = (cdir + 1) % 3; \
+// hypre_IndexD(out_index, cdir) = hypre_IndexD(in_index, 0); \
+// cdir = (cdir + 1) % 3; \
+// hypre_IndexD(out_index, cdir) = hypre_IndexD(in_index, 1); \
+// cdir = (cdir + 1) % 3;
+
+template<typename T, typename U, typename V>
+void MapIndex(T& in_index, U& cdir, V& out_index)
+{
+ if(cdir > 3) cdir = cdir - (cdir / 3) * 3;
+ hypre_IndexD(out_index, cdir) = hypre_IndexD(in_index, 2);
+ if(cdir == 3) cdir = 1;
+ else ++cdir;
+ hypre_IndexD(out_index, cdir) = hypre_IndexD(in_index, 0);
+ if(cdir == 3) cdir = 1;
+ else ++cdir;
+ hypre_IndexD(out_index, cdir) = hypre_IndexD(in_index, 1);
+ if(cdir == 3) cdir = 1;
+ else ++cdir;
+}
/*--------------------------------------------------------------------------
* Sets up new coarse grid operator stucture.

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@ -1,59 +0,0 @@
--- a/src/CMakeLists.txt Mon Mar 13 21:37:24 2017
+++ b/src/CMakeLists.txt Sun Aug 06 19:34:00 2017
@@ -1,6 +1,8 @@
cmake_minimum_required (VERSION 2.8.8)
project (hypre)
+include(GenerateExportHeader)
+
# The version number.
set (HYPRE_VERSION 2.11.2)
set (HYPRE_DATE 2017/03/13)
@@ -618,6 +620,8 @@
struct_ls/sparse_msg_solve.c
)
+set_source_files_properties(struct_ls/pfmg3_setup_rap.c PROPERTIES LANGUAGE CXX)
+
# Headers and sources: sstruct_mv
list (APPEND HYPRE_HEADERS
sstruct_mv/HYPRE_sstruct_mv.h
@@ -758,11 +762,11 @@
find_package (MPI)
if ((MPI_C_FOUND) AND (NOT CMAKE_C_COMPILER STREQUAL MPI_C_COMPILER))
include_directories (${MPI_C_INCLUDE_PATH})
- set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${MPI_C_COMPILE_FLAGS}")
+ #set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${MPI_C_COMPILE_FLAGS}")
endif ()
if ((MPI_CXX_FOUND) AND (NOT CMAKE_CXX_COMPILER STREQUAL MPI_CXX_COMPILER))
include_directories (${MPI_CXX_INCLUDE_PATH})
- set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${MPI_CXX_COMPILE_FLAGS}")
+ #set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${MPI_CXX_COMPILE_FLAGS}")
endif ()
endif (NOT HYPRE_SEQUENTIAL)
@@ -807,7 +811,23 @@
add_library (HYPRE ${HYPRE_SOURCES} ${FEI_LIBS})
-install (TARGETS HYPRE DESTINATION lib)
+if (NOT HYPRE_SEQUENTIAL)
+ target_link_libraries(HYPRE ${MPI_C_LIBRARIES})
+endif()
+
+if (WIN32 AND BUILD_SHARED_LIBS)
+ set_target_properties(HYPRE PROPERTIES WINDOWS_EXPORT_ALL_SYMBOLS ON)
+endif()
+
+generate_export_header(HYPRE EXPORT_FILE_NAME ${CMAKE_BINARY_DIR}/_hypre_export.h)
+list(APPEND HYPRE_HEADERS ${CMAKE_BINARY_DIR}/_hypre_export.h)
+
+install (TARGETS HYPRE
+ RUNTIME DESTINATION bin
+ LIBRARY DESTINATION lib
+ ARCHIVE DESTINATION lib
+)
+
install (FILES ${HYPRE_HEADERS} DESTINATION include)
# add_subdirectory (test EXCLUDE_FROM_ALL)

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@ -1,20 +1,13 @@
include(vcpkg_common_functions)
if(VCPKG_TARGET_IS_WINDOWS)
vcpkg_check_linkage(ONLY_STATIC_LIBRARY)
endif()
vcpkg_download_distfile(ARCHIVE
URLS "http://computation.llnl.gov/projects/hypre-scalable-linear-solvers-multigrid-methods/download/hypre-2.11.2.tar.gz"
FILENAME "hypre-2.11.2.tar.gz"
SHA512 a06321028121e5420fa944ce4fae5f9b96e6021ec2802e68ec3c349f19a20543ed7eff774a4735666c5807ce124eb571b3f86757c67e91faa1c683c3f657469f
)
vcpkg_extract_source_archive_ex(
ARCHIVE ${ARCHIVE}
vcpkg_from_github(
OUT_SOURCE_PATH SOURCE_PATH
PATCHES
fix-root-cmakelists.patch
fix-macro-to-template.patch
fix-blas-vs14-math.patch
fix-lapack-vs14-math.patch
fix-export-global-data-symbols.patch
REPO hypre-space/hypre
REF v2.19.0
SHA512 999979bc2e7d32aef7c084fc8508fb818e6f904db0ee3ebf6b8e8132f290201c407aaba0aa89e7bf09e7264f4e99caf04f3147458847de816fc8ffc81dbee2df
HEAD_REF master
)
if(VCPKG_LIBRARY_LINKAGE STREQUAL dynamic)
@ -28,6 +21,8 @@ vcpkg_configure_cmake(
PREFER_NINJA
OPTIONS
${OPTIONS}
-DHYPRE_ENABLE_HYPRE_BLAS=OFF
-DHYPRE_ENABLE_HYPRE_LAPACK=OFF
OPTIONS_RELEASE
-DHYPRE_BUILD_TYPE=Release
-DHYPRE_INSTALL_PREFIX=${CURRENT_PACKAGES_DIR}
@ -39,7 +34,9 @@ vcpkg_configure_cmake(
vcpkg_install_cmake()
vcpkg_copy_pdbs()
vcpkg_fixup_cmake_targets(CONFIG_PATH lib/cmake/HYPRE)
file(REMOVE_RECURSE ${CURRENT_PACKAGES_DIR}/debug/include)
# Handle copyright
file(COPY ${SOURCE_PATH}/COPYRIGHT DESTINATION ${CURRENT_PACKAGES_DIR}/share/hypre/copyright)
file(INSTALL ${SOURCE_PATH}/COPYRIGHT DESTINATION ${CURRENT_PACKAGES_DIR}/share/${PORT} RENAME copyright)

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@ -1,5 +1,7 @@
Source: superlu
Version: 2020-01-07
Port-Verison: 1
Build-Depends: openblas
Description: Supernodal sparse direct solver.
Homepage: https://github.com/xiaoyeli/superlu
Supports: !(uwp|arm)

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@ -571,9 +571,6 @@ libhsplasma:x64-windows-static=fail
hwloc:arm64-windows=fail
hwloc:arm-uwp=fail
hwloc:x64-uwp=fail
# hypre has a conflict with 'superlu' port
hypre:x64-linux=skip
hypre:x64-osx=skip
icu:arm64-windows=fail
icu:arm-uwp=fail
icu:x64-uwp=fail
@ -1667,26 +1664,6 @@ stxxl:x64-uwp=fail
sundials:arm64-windows=fail
sundials:x64-windows=fail
sundials:x86-windows=fail
# Conflicts between ports:
#The following files are already installed in C:/agent/_work/1/s/installed/x64-windows-static
# and are in conflict with superlu:x64-windows-static
#
#Installed by hypre:x64-windows-static
# include/slu_Cnames.h
# include/slu_cdefs.h
# include/slu_dcomplex.h
# include/slu_ddefs.h
# include/slu_scomplex.h
# include/slu_sdefs.h
# include/slu_util.h
# include/slu_zdefs.h
# include/supermatrix.h
superlu:arm-uwp=skip
superlu:arm-windows=skip
superlu:arm64-windows=skip
superlu:x64-uwp=skip
superlu:x64-windows-static=skip
superlu:x64-windows=skip
systemc:arm64-windows=fail
systemc:arm-uwp=fail
systemc:x64-uwp=fail